Gene detail

Detailed information of OS493_036415-T1 in Lophelia pertusa

Genomic Location: scaffold_364:36671...40631
NR annotation: KAJ7369772.1, hypothetical protein OS493_036415 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HAC7	Succinyl-CoA:glutarate CoA-transferase OS=Homo sapiens OX=9606 GN=SUGCT PE=1 SV=3
Q7TNE1	Succinyl-CoA:glutarate CoA-transferase OS=Mus musculus OX=10090 GN=Sugct PE=1 SV=2
Q68FU4	Succinyl-CoA:glutarate CoA-transferase OS=Rattus norvegicus OX=10116 GN=Sugct PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003067 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02515 all species →	CoA_transf_3	CoA-transferase family III	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044855 all species →	Homologous_superfamily	CoA-transferase family III domain 3 superfamily	Interproscan
IPR003673 all species →	Family	CoA-transferase family III	Interproscan
IPR023606 all species →	Homologous_superfamily	CoA-transferase family III domain 1 superfamily	Interproscan
IPR050483 all species →	Family	CoA-transferase III domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48207 all species →	SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18703	SUGCT; succinate---hydroxymethylglutarate CoA-transferase	EC:2.8.3.13	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036415-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

16.0Max TPM

6.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.55	11.44
polyp at pH7 6	18	16	7.06	16.04
coral polyp · control treatment	16	16	8.26	10.83
coral polyp · oil and dispersant treatment	16	16	5.39	12.03
coral polyp · oil treatment	16	16	8.90	15.56
coral polyp · dispersant treatment	16	16	4.05	9.95
Polyp	10	10	7.84	15.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.81
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.24
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.20
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.99
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.44
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.86
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.42
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.36
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.70
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.77
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.04
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.93
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.