Gene detail

Detailed information of OS493_036418-T1 in Lophelia pertusa

Genomic Location: scaffold_364:55667...57816
NR annotation: KAJ7369775.1, heme oxygenase (decycling) 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2PG53	Heme oxygenase 2 OS=Macaca fascicularis OX=9541 GN=HMOX2 PE=2 SV=1
P43242	Heme oxygenase 2 OS=Oryctolagus cuniculus OX=9986 GN=HMOX2 PE=2 SV=1
P30519	Heme oxygenase 2 OS=Homo sapiens OX=9606 GN=HMOX2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001641 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01126 all species →	Heme_oxygenase	Heme oxygenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016084 all species →	Homologous_superfamily	Haem oxygenase-like, multi-helical	Interproscan
IPR016053 all species →	Family	Haem oxygenase-like	Interproscan
IPR002051 all species →	Family	Haem oxygenase	Interproscan
IPR018207 all species →	Conserved_site	Haem oxygenase conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10720 all species →	HEME OXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004392 all species →	Molecular Function	heme oxygenase (decyclizing) activity	Interproscan
GO:0006788 all species →	Biological Process	heme oxidation	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0042167 all species →	Biological Process	heme catabolic process	Interproscan
GO:0055072 all species →	Biological Process	obsolete iron ion homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036418-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036418-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

46.9Max TPM

25.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.09	46.23
polyp at pH7 6	18	18	28.78	46.15
coral polyp · control treatment	16	16	30.00	43.56
coral polyp · oil and dispersant treatment	16	16	29.87	46.86
coral polyp · oil treatment	16	16	26.02	44.11
coral polyp · dispersant treatment	16	16	19.15	43.24
Polyp	10	10	14.00	28.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.23
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.83
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.73
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.53
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.78
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.33
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.23
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.12
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.62
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.92
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.09
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.42
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.94
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.75
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.27
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.90
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.65
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.79
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.27
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.71
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.11
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.05
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	28.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.52
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.69

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.