Gene detail

Detailed information of OS493_036428-T1 in Lophelia pertusa

Genomic Location: scaffold_364:156747...162162
NR annotation: KAJ7369785.1, ADP-ribosylation factor-like protein 5B [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96KC2	ADP-ribosylation factor-like protein 5B OS=Homo sapiens OX=9606 GN=ARL5B PE=1 SV=1
Q9D4P0	ADP-ribosylation factor-like protein 5B OS=Mus musculus OX=10090 GN=Arl5b PE=2 SV=3
Q2KJ96	ADP-ribosylation factor-like protein 5A OS=Bos taurus OX=9913 GN=ARL5A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000273 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00025 all species →	Arf	ADP-ribosylation factor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006689 all species →	Family	Small GTPase superfamily, ARF/SAR type	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR024156 all species →	Family	Small GTPase superfamily, ARF type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11711 all species →	ADP RIBOSYLATION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:1903292 all species →	Biological Process	protein localization to Golgi membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07950	ARL5B; ADP-ribosylation factor-like protein 5B	-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036428-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

81.9Max TPM

29.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.31	32.03
polyp at pH7 6	18	17	20.29	34.28
coral polyp · control treatment	16	16	30.75	50.28
coral polyp · oil and dispersant treatment	16	16	48.23	81.93
coral polyp · oil treatment	16	16	25.71	48.25
coral polyp · dispersant treatment	16	16	38.08	78.03
Polyp	10	10	20.02	27.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.53
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.10
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.67
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.63
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.50
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.37
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.96
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.46
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.66
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.55
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.66
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.52
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.08
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.76
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.80
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.68
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.24
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.83
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.28
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.49
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.39
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.23
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.39
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.62
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	22.37
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.17
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	18.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.92
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.91
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.08

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.