Gene detail

Detailed information of OS493_036430-T1 in Lophelia pertusa

Genomic Location: scaffold_364:186531...193733
NR annotation: KAJ7369787.1, ATP-binding cassette sub- B member 6, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08D64	ATP-binding cassette sub-family B member 6 OS=Xenopus tropicalis OX=8364 GN=abcb6 PE=2 SV=1
Q9NP58	ATP-binding cassette sub-family B member 6 OS=Homo sapiens OX=9606 GN=ABCB6 PE=1 SV=1
A0A125QXJ1	ATP-binding cassette sub-family B member 6 OS=Mesocricetus auratus OX=10036 GN=ABCB6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001447 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF16185 all species →	MTABC_N	Mitochondrial ABC-transporter N-terminal five TM region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR039421 all species →	Family	Type 1 protein exporter	Interproscan
IPR032410 all species →	Domain	Mitochondrial ABC-transporter, N-terminal five TM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221 all species →	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0015439 all species →	Molecular Function	ABC-type heme transporter activity	Interproscan
GO:0015886 all species →	Biological Process	heme transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036430-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036430-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

36.3Max TPM

15.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.12	19.29
polyp at pH7 6	18	18	14.99	19.57
coral polyp · control treatment	16	16	16.59	26.37
coral polyp · oil and dispersant treatment	16	16	20.53	36.26
coral polyp · oil treatment	16	16	14.64	20.90
coral polyp · dispersant treatment	16	16	13.54	23.40
Polyp	10	10	7.83	13.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.36
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.30
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.82
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.00
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.19
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.92
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.41
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.16
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.39
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.97
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.61
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.37
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.40
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.91
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.03
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.25
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.50
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.23
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.12
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.64
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.56
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.27

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.