Gene detail

Detailed information of OS493_036431-T1 in Lophelia pertusa

Genomic Location: scaffold_364:194162...198301
NR annotation: KAJ7369788.1, ATP-binding cassette sub- B member 6, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08D64	ATP-binding cassette sub-family B member 6 OS=Xenopus tropicalis OX=8364 GN=abcb6 PE=2 SV=1
A0A125QXJ1	ATP-binding cassette sub-family B member 6 OS=Mesocricetus auratus OX=10036 GN=ABCB6 PE=2 SV=1
Q9DC29	ATP-binding cassette sub-family B member 6 OS=Mus musculus OX=10090 GN=Abcb6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001447 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR039421 all species →	Family	Type 1 protein exporter	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221 all species →	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0015439 all species →	Molecular Function	ABC-type heme transporter activity	Interproscan
GO:0015886 all species →	Biological Process	heme transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06147	ABCB-BAC; ATP-binding cassette, subfamily B, bacterial	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036431-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

71.3Max TPM

30.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	32.10	46.46
polyp at pH7 6	18	18	35.79	58.59
coral polyp · control treatment	16	16	28.98	44.37
coral polyp · oil and dispersant treatment	16	16	39.92	71.28
coral polyp · oil treatment	16	16	30.17	43.40
coral polyp · dispersant treatment	16	16	20.93	40.42
Polyp	10	10	23.28	33.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.46
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.42
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.08
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.45
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.50
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.26
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.06
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.09
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.40
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.61
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.59
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.69
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.21
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.10
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.51
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.91
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.91
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.58
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.98
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.53
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.02
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.28
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.40
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.99
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.64
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.28
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.46
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	33.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.84
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.58
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	29.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.05

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.