Gene detail

Detailed information of OS493_036436-T1 in Lophelia pertusa

Genomic Location: scaffold_364:258078...260134
NR annotation: KAJ7369793.1, hypothetical protein OS493_036436 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P19891	Asparagine synthetase [glutamine-hydrolyzing] OS=Cricetulus griseus OX=10029 GN=ASNS PE=2 SV=2
Q61024	Asparagine synthetase [glutamine-hydrolyzing] OS=Mus musculus OX=10090 GN=Asns PE=1 SV=3
Q1LZA3	Asparagine synthetase [glutamine-hydrolyzing] OS=Bos taurus OX=9913 GN=ASNS PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003759 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00733 all species →	Asn_synthase	Asparagine synthase	Domain	Interproscan
PF13537 all species →	GATase_7	Glutamine amidotransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017932 all species →	Domain	Glutamine amidotransferase type 2 domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR006426 all species →	Family	Asparagine synthase, glutamine-hydrolyzing	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR001962 all species →	Domain	Asparagine synthase	Interproscan
IPR033738 all species →	Domain	Asparagine synthase, N-terminal domain	Interproscan
IPR050795 all species →	Family	Asparagine Synthetase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11772 all species →	ASPARAGINE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004066 all species →	Molecular Function	asparagine synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0006529 all species →	Biological Process	asparagine biosynthetic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01953	asnB, ASNS; asparagine synthase (glutamine-hydrolysing)	EC:6.3.5.4	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036436-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

215.3Max TPM

71.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	37.15	67.22
polyp at pH7 6	18	18	58.13	82.31
coral polyp · control treatment	16	16	63.89	134.44
coral polyp · oil and dispersant treatment	16	16	116.16	186.76
coral polyp · oil treatment	16	16	51.91	94.93
coral polyp · dispersant treatment	16	16	125.00	215.35
Polyp	10	10	44.74	101.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.68
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.92
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.88
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.77
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.81
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.31
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.10
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.74
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.47
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.28
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.51
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.54
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	186.76
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	173.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	172.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	170.85
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	152.89
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	126.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	126.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	114.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.83
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.25
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.06
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.39
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	215.35
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	172.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	164.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	159.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	140.75
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	136.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	133.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	131.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	127.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.89
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.75
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	101.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	70.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	55.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	53.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	48.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	44.04
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.37
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.