Detailed information of OS493_036441-T1 in Lophelia pertusa

Genomic Location: scaffold_364:282137...287463
NR annotation: KAJ7369798.1, Syndetin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
F1LSG8Syndetin OS=Rattus norvegicus OX=10116 GN=Vps50 PE=1 SV=1
Q96JG6Syndetin OS=Homo sapiens OX=9606 GN=VPS50 PE=1 SV=3
Q8CI71Syndetin OS=Mus musculus OX=10090 GN=Vps50 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003524 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10474
all species →		Syndetin_CSyndetin, C-terminalRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040047
all species →		FamilySyndetinInterproscan
IPR019514
all species →		DomainSyndetin, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13258
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000149
all species →		Molecular FunctionSNARE bindingInterproscan
GO:0032456
all species →		Biological Processendocytic recyclingInterproscan
GO:0042147
all species →		Biological Processretrograde transport, endosome to GolgiInterproscan
GO:1990745
all species →		Cellular ComponentEARP complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_036441-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_036441-T1 global co-expression network
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