Gene detail

Detailed information of OS493_036444-T1 in Lophelia pertusa

Genomic Location: scaffold_365:5408...9933
NR annotation: KAJ7351109.1, hypothetical protein OS493_036444 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R6K2	Proton-coupled zinc antiporter SLC30A1 OS=Macaca fascicularis OX=9541 GN=SLC30A1 PE=2 SV=1
Q60738	Proton-coupled zinc antiporter SLC30A1 OS=Mus musculus OX=10090 GN=Slc30a1 PE=1 SV=1
Q9Y6M5	Proton-coupled zinc antiporter SLC30A1 OS=Homo sapiens OX=9606 GN=SLC30A1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002043 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01545 all species →	Cation_efflux	Cation efflux family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002524 all species →	Family	Cation efflux protein	Interproscan
IPR027469 all species →	Homologous_superfamily	Cation efflux transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45820 all species →	FI23527P1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0006882 all species →	Biological Process	intracellular zinc ion homeostasis	Interproscan
GO:0010312 all species →	Biological Process	detoxification of zinc ion	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071577 all species →	Biological Process	zinc ion transmembrane transport	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0008324 all species →	Molecular Function	monoatomic cation transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14688	SLC30A1, ZNT1; solute carrier family 30 (zinc transporter), member 1	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036444-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

132.2Max TPM

34.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.77	26.13
polyp at pH7 6	18	18	19.31	31.82
coral polyp · control treatment	16	16	46.79	96.35
coral polyp · oil and dispersant treatment	16	16	52.02	90.19
coral polyp · oil treatment	16	16	31.90	71.84
coral polyp · dispersant treatment	16	16	54.45	132.23
Polyp	10	9	9.20	18.12

Per sample · hover a bar for the full sample record

Show the sample table (110 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.55
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.19
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.94
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.44
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.10
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.97
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.54
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.60
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.02
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.50
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.66
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.24
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.39
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.28
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.91
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.15
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.19
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.99
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.60
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.18
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.42
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.62
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.92
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	132.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.16
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.48
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.28
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.52
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.07
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.