Gene detail

Detailed information of OS493_036543-T1 in Lophelia pertusa

Genomic Location: scaffold_369:199502...230115
NR annotation: KAJ7376164.1, hypothetical protein OS493_036543 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EWY9	Mucin-like protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q62718	Neurotrimin OS=Rattus norvegicus OX=10116 GN=Ntm PE=1 SV=1
Q9P121	Neurotrimin OS=Homo sapiens OX=9606 GN=NTM PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000210 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF13895 all species →	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR052080 all species →	Family	von Willebrand factor C/EGF & Fibrillin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47333 all species →	VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036543-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036543-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

47.6Max TPM

10.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.76	47.62
polyp at pH7 6	18	18	11.07	27.06
coral polyp · control treatment	16	16	8.10	19.05
coral polyp · oil and dispersant treatment	16	16	6.60	12.36
coral polyp · oil treatment	16	16	7.61	17.31
coral polyp · dispersant treatment	16	16	6.23	12.07
Polyp	10	10	13.06	26.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.62
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.53
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.06
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.33
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.68
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.08
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.98
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.96
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.81
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.32
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.87
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.61
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.10
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.96

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.