Gene detail

Detailed information of OS493_036586-T1 in Lophelia pertusa

Genomic Location: scaffold_373:68647...79150
NR annotation: KAJ7388620.1, Calcium-activated potassium channel subunit alpha-1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03720	Calcium-activated potassium channel slowpoke OS=Drosophila melanogaster OX=7227 GN=slo PE=1 SV=3
B7ZC96	Calcium-activated potassium channel subunit alpha-1a OS=Danio rerio OX=7955 GN=kcnma1a PE=1 SV=1
Q90ZC7	Calcium-activated potassium channel subunit alpha-1 OS=Xenopus laevis OX=8355 GN=kcnma1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001513 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21014 all species →	Slowpoke_C	Ca2+-activated K+ channel Slowpoke, TrkA_C like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047871 all species →	Family	Calcium-activated potassium channel slowpoke-like	Interproscan
IPR048735 all species →	Domain	Ca2+-activated K+ channel Slowpoke-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10027 all species →	CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005267 all species →	Molecular Function	potassium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0045211 all species →	Cellular Component	postsynaptic membrane	Interproscan
GO:0060072 all species →	Molecular Function	large conductance calcium-activated potassium channel activity	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036586-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036586-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

51.5Max TPM

21.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.70	49.37
polyp at pH7 6	18	18	16.93	28.18
coral polyp · control treatment	16	16	25.00	49.56
coral polyp · oil and dispersant treatment	16	16	18.16	31.03
coral polyp · oil treatment	16	16	22.05	38.02
coral polyp · dispersant treatment	16	16	20.80	51.55
Polyp	10	10	25.23	47.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.12
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.66
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.43
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.34
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.80
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.62
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.96
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.95
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.85
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.32
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.23
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.56
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.81
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.34
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.32
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.54
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.67
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.11
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.93
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.30
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.02
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.40
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	47.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	44.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	33.76
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	32.26
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.40

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.