Gene detail

Detailed information of OS493_036691-T1 in Lophelia pertusa

Genomic Location: scaffold_380:1419...30814
NR annotation: KAJ7382141.1, hypothetical protein OS493_036691, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BTW9	Tubulin-specific chaperone D OS=Homo sapiens OX=9606 GN=TBCD PE=1 SV=2
Q8BYA0	Tubulin-specific chaperone D OS=Mus musculus OX=10090 GN=Tbcd PE=1 SV=1
Q28205	Tubulin-specific chaperone D OS=Bos taurus OX=9913 GN=TBCD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12612 all species →	TFCD_C	Tubulin folding cofactor D C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033162 all species →	Family	Tubulin-folding cofactor D	Interproscan
IPR022577 all species →	Domain	Tubulin-specific chaperone D, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12658 all species →	BETA-TUBULIN COFACTOR D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0007021 all species →	Biological Process	tubulin complex assembly	Interproscan
GO:0007023 all species →	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0016328 all species →	Cellular Component	lateral plasma membrane	Interproscan
GO:0034333 all species →	Biological Process	adherens junction assembly	Interproscan
GO:0048487 all species →	Molecular Function	beta-tubulin binding	Interproscan
GO:0070830 all species →	Biological Process	bicellular tight junction assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036691-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036691-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

60.6Max TPM

22.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.96	35.93
polyp at pH7 6	18	18	26.33	55.22
coral polyp · control treatment	16	16	23.29	37.94
coral polyp · oil and dispersant treatment	16	16	17.06	24.57
coral polyp · oil treatment	16	16	22.53	31.76
coral polyp · dispersant treatment	16	16	16.73	50.77
Polyp	10	10	28.91	60.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.28
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.48
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.35
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.46
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.82
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.11
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.22
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.89
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.79
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.71
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.94
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.46
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.57
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.10
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.42
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.26
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.77
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.32
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.99
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.72
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.97
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.91
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	60.55
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	54.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	39.19
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	32.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	28.82
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.61
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.01

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.