Gene detail

Detailed information of OS493_036747-T1 in Lophelia pertusa

Genomic Location: scaffold_381:186583...200750
NR annotation: KAJ7376141.1, von Willebrand factor type A domain [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_036747-T1

ATGGCAACCGATCCCGACAAGACTCACGTGTTTACATCGGATTTTAAGCAGTTGCAGTACATCACTAACGATCTTAAGAAAGCCATTTGCTTGAGTGCTGGTGGTACTCTTAAAGTTTCTAAACTGCAGCCATGTGTATGTGGACCAACTAAACCAGTAGGCCCAACAACACCAGCATTAAAGACAACAAAGAAACCAGGGGGACCCGGAGGCCCCGGGGGTCCAGGAGGCCCCGGAGGTCCCGGTGGTCCCGGAGGTCCGAATGGACCAGGAGGCCCCGGTGGACCGGGAGGTCCCGGGGACCCGGAGGCCCCGCGCCCGGTAAAACAACAAAGCCAACTAAAAAACCCCCAGGTACACCCGGAGGACCCGGAGGACCCGGAGGCCCCGGTGGACCAGGAGGCCCCGGTGGACCGGGAGGTCCCGACAACAAAACCCCCAGGTAAACCTAATGGCCCCGGAGGACCCGGAGGTCCAGGAGGTCCCGGTGGCCCGGGAGGCCCCGGTGGCCCCGGGGGACCCGGCGGACCAACAACCAAGAGGCCAGGTAAATCTACAAGACCTACGAAACCCACTAAAGCTCCGGGGACACCCGGGGGCCCAGGAGGACCAAGCGGCCCTGGGGGACCCGGGGGCCCGGGGGTCCAGGGGGCCCAGGAGGCCCAGGAGGCCCCGGTGGACCAGGCGGAAAGACCACACCTCGACCAGGAAAAACTACCAAACGCACTAAGCCCACAAAGAAACCAGGAACCCCTGGGGGTCCTGGTGGACCAGGGGGACCCGGTGGCCCGGGGGGACCGGGTGGCCCCGGTGGCCCAGGGGGACCAGGAGGATCTACGACGCCGCGTCCTGGAAAAACGACAAAGCCAACCAAACCAACAAAGAAGCCGGGTACGCCAGGAGGTCCCAGTGGTCCCGGTGGCCCCGGTGGCCCCGCGGGACCCGGAGGTCCCGGTGGACCGGGAGGTCCCGGTGGTCCAGGAGGACCCGGAGGTCCCGGAGGACCGGGTGGCCCGGGAGGCCCCGGTGGTCCGGCAGGGCCCACAACCAAATCTCCAAGAGGGCCAACCAAGAAGACCAAGCCAACTCCGTACGCCCCTGGGAAGCCCGGTGGCCCGGGGGGACCAAAGGTCCCGGAGGCCCGGAGGACCCGGGGGCCCGGGTGGACCCGGAGGACCCGGCGGACCAGGAGGACCAGGAGGACCGGGAGGCCCGAGTGGTCCCGGAGGCCCCGTGGCCCATACGGACCCACAACAAAGAAGCCAGGAAAGCCAGGAGGACCCGGGGCCCGGAGGTCCAGGGGGACCCGGAGGACCTACAACAAAGCGACCCGGGAAGCCAGGGGGCCCTGGAAAACCGGGAGGTCCTGGTGGCCCGGAGGACCGGGCGGCCCGGGAGGTCCAGGAGGTCCCGGTGGACCCGGAGGTCCAAAAGGTCCCAAGACTACAACACCACGACCGGTGTTCCGACGAAAAACCAACAACAAGAAAACCAGGAACCCCAGGGGGACCAGGAGGTCCTAATGGCCCCGGTGGACCCGGTGGCCCGGGAGGTCCGGGTGGACCGAGCGGCCCCGGGGTCCTGGAGGACCCGGGGATCTACAACTGCAAAACCGGGTGTACCAACCAAACCAACTACCCCGACAAAACGTGCACCTGGTACTCCCGGGGACCCGGAGGACCAGGGGGACCCGGAGGCCCGGGTGGACCTGGAGGCCCGGGGGGACCGGGTGGCCCCGGAGGACCCGGTGGACCTGGAGGACCTACAACTGCACGACCGGGTGTGCCAACTAAATCAACCACCCCGACAAAACGTCCACCTGGTACTCCCGGTGGCCCCGGAGGCCCGGGGGGACCGGGTGGCCCCGGGGGACCCGGAGGACCCGGCGGTAAAACAACTCCTAAACCTGGTGTCCCAACTAAAGCGACCACGCCAACAAAACGGCCAGGCAGCCCAGGAGGTCCGGGAGGTCCAAAAGGCCCCGGGGGACCTTCAGGACCCGGGGGTCCCGGGGGACCCGGCGGACCTGGCGGGCCTGGAGGCCCCGGCGGACCAGGAGGGCCAGGTGGACCAGGCGGACCGCCAGCAGGACAACCTACAACACCAGTAACAAAACCACCCGGTACTCCCGGAGGTCCGGGAGGCCCCGGCGGGCCTGGAGGACCCGGGGGACCCGGGGGTCCCGGAGGACCCGGAGGACCATCAGGACCAACAACACCAACTAAAGCCCCAGGGAAACCCGGGGGACCGGGCGGGCCAGGAGGCCCCGGTGGACCGGGAGGACCAGGGGGACCAACAACAAGGCGACCTGGAAAACCCGGTGGGCCCGGAGGACCCGGCGGGCCCGGGGGCCCCGGGGGTCCTAGTGGCCCCGGAGGACCAAAAACAAAACCACCAGGAACCCCAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTTCTAAGAGTGTTTCTAAGAGTGTTGCTAAGAGTGTTCCAAAGAGTGTTTCCAAAGAGTGTTCCTAAGAGTATTCCTAAGAGTGTTCCTAAGAGTGTTCCTAACAAAAAAAAACAAAAAAAAACAAAAAAGAGTGTTCCTAAGAGTGTTTCTAAGTGTGGTTCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTCCTAAGTGTGTTTCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGCGTTCCTAAGAGTGGTCTTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTCCTAAGTGTGGTTCTAAGAGTGTTCCTAAGAGCGTCCCTAAGAGTGGTCTTAAGAGTGTTCCTAAGAGTGGTTCTAAGAGTGTTCCTAAGAGTGTCCTAAGAATGTTCCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTTCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGTTCCTAAGAGTGGCCCAGGAGGTCCTGGTGGCCCCGGGGGGCCTGGGGGACCGGGAGGTCCAGGGGGTCCAGGCGGCCCCGGTGGTCCTACCACGAAAAAACCCAGGAACACCAGGAGGCCCCGGTGGTCCTGGAGGACCTACTACAAAACCACCACCCGGAAACCAGGAGGACCGGGTGGCCCCGGAGGACCAGGGGGCCCCGGGGGTCCAGGAGGACCTGGCACCAGGAAAGCCAGGAGGTCCAGGAGCGCCCGGGGGACCCGGAGGCCCCGGAGGACCAGGAGGACCCGGAGGACCCGGTGGCCCGGGTGGACCGGGAGGCCCCGGCGGACCTAAAACAACAAAACCAGTTCCTTCAAAAACAACGAAACCCACCAAGGCTCCAGGTACCCCAGGGGGCCCCGGTGGCCCCGGCGGCCCAGGAGGGCCCGGTGGGCCTGGAGGCCCCGGTGGACCCGGCGGACCAGGCGGACCTAAGACAAAGCCTCCTGGCACTTTAACAAAACCAACCAAATATGCCCCTGGAAATCCAGGGGGACCCGGAGGCCCGGGGGGACCCGGCGGCCCCGGTGGACCAGGAGGCCCGGGCGGACCAGGGGGACCACCGAAAACTACTCCTAAAACACCGAAAACACCAGCACCAGGGAAACCTGGTGGCCCCGGTGGCCCAGGGGGGCCCGGGGGGCCCGGTGGACCAACAACAAAGCGACCAGGATCCCCAGGGGGACCAGGAGGCCCCGGAGGTCCCGGTGGACCGGGTGGACCCGGAGGTCCCGGTGGCCCCGGAGGTCCGGGTGGTCCAACAACGAAGAAACCAGGGAGCCCAGGGGGACCAGGAGGCCCCGGTGGTCCCGGTGGACCTGGGGGACCCGGAGGGCCCGGTGGACCAACAACAAAGCGACCAGGATCCCCAGGGGGACCAGGAGGCCCCGGGGGTCCCGGTGGTCCGGGTGGACCTGGAGGTCCCGGGGGCCCCGGAGGTCCGGGTGGTCCACCAACGAAGAAACCTGGACAGCCTGGGAAACCCAAAACTACTACAAAGCCCCCAGGCTTACCAGGTGGTCCAGGGGCCCCCGGGGGTCCCGGCGGACCAGGAGGCCCCGGAGGTCCGGGAGGTCCTGGTGGACCCGGGGGACCAGGAGGACCCAATGGCCCTACAACTGCTCCTCCAGGAAAACCAGGGGGACCCGGCGGCCCCGGGGGACCGGCAGGCCCTGGTGGCCCCGGGGGACCAGGAGGTCCGAAAACAGCACCACCCGGTCAACCAGGGGGACCAGGAGGACCCGGTGGACCAGGAGGCCCCGGTGGCCCGGGGGCCCCGGCGGACCAGGAGGTCCCGGATGTGTTATGCGCCCGGGTGTTCCAGGAGCGAAAACAACGCCGAAAAGTGGTCCAACAAAACCTGGCGCTGTCACGCCAACAAAACATAAATGCCTCACACTTCCACCAGCACATAATGCATTCTGTTAACCGTGCTGTCTTTTTAGGTTTTACCGTTATAAGGAAACCAACAACTATTCCCACGCGGCCAGTTGGACCATCTGGCCCAACTACAAGGCCTGCTGCTACAACCTCGCCCAGTAAAGTGTGCAAAGCAAAACTGGATATAGGATTTGTGATCGACACAGCTGGAGGCGTCAAAGAAGTATTCCCATATATCAAGAAATTCTTCCAAGAACTGGTGGATTCCTTTACCATCTCCAGCCAGAATGTCCGTGTTGGTTTAGTGACGGACTCATCCCGTCCTGCTGTCAAGTTCAGCTTTGGTCAGTACAACAGTCCTAAACAAATAAAACGCGTTATTCGACTTCTACAGCCATTAGGTGGCGCAAGAAAGACAGGAACAGCATTAAAACTCGTAAACGCCTATTTGGCGCCAGCAAGGGAAAGAAAACGTTGA

Transcript

OS493_036747-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0086169 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10068 all species →	BONE MARROW PROTEOGLYCAN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_036747-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036747-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

94TPM > 0

7Conditions

19.6Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	0.77	2.62
polyp at pH7 6	18	12	0.41	1.65
coral polyp · control treatment	16	15	5.13	15.13
coral polyp · oil and dispersant treatment	16	15	3.51	14.67
coral polyp · oil treatment	16	16	3.75	13.59
coral polyp · dispersant treatment	16	16	5.54	19.62
Polyp	10	5	0.17	0.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.45
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.36
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.34
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.21
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.50
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.31
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.53
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.34
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.78
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.94
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.70
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.57
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.32
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.