Gene detail

Detailed information of OS493_036771-T1 in Lophelia pertusa

Genomic Location: scaffold_382:197754...205248
NR annotation: KAJ7369740.1, hypothetical protein OS493_036771 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43822	Cilia- and flagella-associated protein 410 OS=Homo sapiens OX=9606 GN=CFAP410 PE=1 SV=1
Q8C6G1	Cilia- and flagella-associated protein 410 OS=Mus musculus OX=10090 GN=Cfap410 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006545 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19252 all species →	HIND	HIND motif	Motif	Interproscan
PF14580 all species →	LRR_9	Leucine-rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR045347 all species →	Conserved_site	HIND motif	Interproscan
IPR003603 all species →	Domain	U2A'/phosphoprotein 32 family A, C-terminal	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18849 all species →	LEUCINE RICH REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23456	CFAP410, C21ORF2; cilla- and flagella-associated protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036771-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

19.4Max TPM

6.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.39	19.41
polyp at pH7 6	18	17	6.29	12.70
coral polyp · control treatment	16	16	6.77	10.90
coral polyp · oil and dispersant treatment	16	16	4.94	9.78
coral polyp · oil treatment	16	16	7.45	12.98
coral polyp · dispersant treatment	16	16	4.53	10.35
Polyp	10	10	6.81	11.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.19
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.06
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.97
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.75
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.63
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.73
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.12
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.37
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.69
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.99
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.33
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.88
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.98
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.92
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.61
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.75
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.35
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.72

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.