Detailed information of OS493_036843-T1 in Lophelia pertusa

Genomic Location: scaffold_386:103528...108714
NR annotation: KAJ7382134.1, E3 ubiquitin-protein ligase ubr4 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2TL32E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus OX=10116 GN=Ubr4 PE=1 SV=2
A2AN08E3 ubiquitin-protein ligase UBR4 OS=Mus musculus OX=10090 GN=Ubr4 PE=1 SV=1
Q5T4S7E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens OX=9606 GN=UBR4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001776 (this species only)
Ubiquitin familyE3|E3 activity|UBR-box · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02207
all species →		zf-UBRPutative zinc finger in N-recognin (UBR box)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003126
all species →		DomainZinc finger, UBR-typeInterproscan
IPR047509
all species →		DomainE3 ubiquitin-protein ligase UBR4-like, UBR-boxInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR045189
all species →		FamilyE3 ubiquitin ligase UBR4-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21725
all species →		E3 UBIQUITIN-PROTEIN LIGASE UBR4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_036843-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_036843-T1 global co-expression network
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