Gene detail

Detailed information of OS493_036856-T1 in Lophelia pertusa

Genomic Location: scaffold_387:64329...66286
NR annotation: KAJ7376093.1, hypothetical protein OS493_036856 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2HJH1	Aspartyl aminopeptidase OS=Bos taurus OX=9913 GN=DNPEP PE=1 SV=1
Q9Z2W0	Aspartyl aminopeptidase OS=Mus musculus OX=10090 GN=Dnpep PE=1 SV=2
Q5RBT2	Aspartyl aminopeptidase OS=Pongo abelii OX=9601 GN=DNPEP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002375 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02127 all species →	Peptidase_M18	Aminopeptidase I zinc metalloprotease (M18)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001948 all species →	Family	Peptidase M18	Interproscan
IPR023358 all species →	Homologous_superfamily	Peptidase M18, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28570 all species →	ASPARTYL AMINOPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004177 all species →	Molecular Function	aminopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036856-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036856-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

157.5Max TPM

84.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	97.02	124.81
polyp at pH7 6	18	18	82.58	101.42
coral polyp · control treatment	16	16	102.88	157.51
coral polyp · oil and dispersant treatment	16	16	68.95	111.59
coral polyp · oil treatment	16	16	89.39	130.74
coral polyp · dispersant treatment	16	16	76.26	132.14
Polyp	10	9	66.96	127.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	124.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	123.82
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	122.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	112.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	112.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	110.44
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	108.18
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	98.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	93.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.66
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.24
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.77
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	90.15
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.32
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.88
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.26
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	157.51
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	139.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	136.70
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.42
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	107.43
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	107.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.83
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.96
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.12
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.67
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	130.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	116.34
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	116.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	106.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.40
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	132.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.57
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.86
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	127.35
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	106.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	99.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	94.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	73.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	69.09
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	39.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	35.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	25.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.