Gene detail

Detailed information of OS493_036868-T1 in Lophelia pertusa

Genomic Location: scaffold_387:203434...209203
NR annotation: KAJ7376104.1, Putative beta-lactamase-like 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54SB5	Beta-lactamase-like protein 4 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0282557 PE=3 SV=2
Q54SB6	Beta-lactamase-like protein 3 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0282555 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000656 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00144 all species →	Beta-lactamase	Beta-lactamase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012338 all species →	Homologous_superfamily	Beta-lactamase/transpeptidase-like	Interproscan
IPR051478 all species →	Family	Beta-lactamase-like Antibiotic Biosynthesis/Resistance	Interproscan
IPR001466 all species →	Domain	Beta-lactamase-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22935 all species →	PENICILLIN-BINDING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_036868-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036868-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036868-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

26.2Max TPM

10.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.24	26.25
polyp at pH7 6	18	18	10.48	16.84
coral polyp · control treatment	16	16	10.99	21.07
coral polyp · oil and dispersant treatment	16	15	5.91	11.91
coral polyp · oil treatment	16	16	13.28	23.57
coral polyp · dispersant treatment	16	16	10.03	19.48
Polyp	10	7	3.62	10.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.09
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.35
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.82
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.94
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.92
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.71
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.35
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.07
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.88
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.91
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.91
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.90
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.84
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.61
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.31
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.47
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.39
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.65
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.15
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.48
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.49
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.03
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.42
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.43
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.86
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.