Gene detail

Detailed information of OS493_036869-T1 in Lophelia pertusa

Genomic Location: scaffold_387:209984...213937
NR annotation: KAJ7376105.1, hypothetical protein OS493_036869 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8MY62	Putative beta-lactamase-like 1 OS=Homo sapiens OX=9606 GN=LACTBL1 PE=1 SV=2
Q54SB6	Beta-lactamase-like protein 3 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0282555 PE=3 SV=1
Q54VJ1	Beta-lactamase-like protein 2 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0280307 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000640 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00144 all species →	Beta-lactamase	Beta-lactamase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051478 all species →	Family	Beta-lactamase-like Antibiotic Biosynthesis/Resistance	Interproscan
IPR001466 all species →	Domain	Beta-lactamase-related	Interproscan
IPR012338 all species →	Homologous_superfamily	Beta-lactamase/transpeptidase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22935 all species →	PENICILLIN-BINDING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_036869-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036869-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036869-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

36.3Max TPM

16.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.89	28.70
polyp at pH7 6	18	18	18.98	27.50
coral polyp · control treatment	16	16	16.94	33.35
coral polyp · oil and dispersant treatment	16	16	9.60	18.01
coral polyp · oil treatment	16	16	21.79	31.85
coral polyp · dispersant treatment	16	16	13.08	26.36
Polyp	10	10	14.39	36.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.70
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.53
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.41
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.85
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.98
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.24
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.98
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.64
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.35
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.28
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.66
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.25
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.80
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.36
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.66
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.89
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.15
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.32
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.87
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	36.31
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.76
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.10
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.34

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.