Gene detail

Detailed information of OS493_036874-T1 in Lophelia pertusa

Genomic Location: scaffold_387:250716...252758
NR annotation: KAJ7376110.1, Nuclear factor erythroid [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y4A8	Nuclear factor erythroid 2-related factor 3 OS=Homo sapiens OX=9606 GN=NFE2L3 PE=1 SV=1
Q5NUA6	Nuclear factor erythroid 2-related factor 2 OS=Bos taurus OX=9913 GN=NFE2L2 PE=2 SV=2
Q9WTM4	Nuclear factor erythroid 2-related factor 3 OS=Mus musculus OX=10090 GN=Nfe2l3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008038 (this species only)
Transcription factor family	TF_bZIP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03131 all species →	bZIP_Maf	bZIP Maf transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047167 all species →	Family	Nuclear Factor Erythroid-derived 2-like	Interproscan
IPR004826 all species →	Domain	Basic leucine zipper domain, Maf-type	Interproscan
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR008917 all species →	Homologous_superfamily	Transcription factor, Skn-1-like, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24411 all species →	NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036874-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036874-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,607.2Max TPM

362.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	95.80	157.44
polyp at pH7 6	18	18	104.27	121.78
coral polyp · control treatment	16	16	275.47	573.18
coral polyp · oil and dispersant treatment	16	16	487.88	822.14
coral polyp · oil treatment	16	16	315.22	422.34
coral polyp · dispersant treatment	16	16	1,099.08	1,607.16
Polyp	10	10	143.85	389.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	157.44
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	147.19
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	124.39
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	117.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	112.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	105.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.67
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.12
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.86
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.19
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	121.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	120.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	118.05
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	117.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	117.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	113.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	111.87
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	102.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.82
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	573.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	560.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	356.43
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	312.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	293.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	263.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	263.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	261.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	228.25
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	223.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	217.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	210.54
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	192.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	189.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	822.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	673.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	620.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	584.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	573.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	573.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	539.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	511.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	449.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	449.48
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	408.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	376.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	362.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	329.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	293.83
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	236.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	422.34
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	414.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	399.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	382.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	376.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	376.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	373.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	348.41
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	340.14
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	308.86
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	292.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	284.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	240.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	195.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	146.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	140.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,607.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,515.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,477.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,357.68
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,355.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,315.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,313.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,282.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,185.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,068.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,033.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	850.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	838.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	786.72
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	414.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	182.23
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	389.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	211.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	176.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	131.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	126.56
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	102.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	88.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	84.23
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	75.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	52.60

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.