Gene detail

Detailed information of OS493_036885-T1 in Lophelia pertusa

Genomic Location: scaffold_388:276164...278876
NR annotation: KAJ7369726.1, Dipeptidyl peptidase 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UHL4	Dipeptidyl peptidase 2 OS=Homo sapiens OX=9606 GN=DPP7 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001436 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05577 all species →	Peptidase_S28	Serine carboxypeptidase S28	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042269 all species →	Homologous_superfamily	Serine carboxypeptidase S28, SKS domain	Interproscan
IPR008758 all species →	Family	Peptidase S28	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11010 all species →	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070008 all species →	Molecular Function	serine-type exopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036885-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036885-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

162.4Max TPM

18.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.74	23.02
polyp at pH7 6	18	18	11.70	22.38
coral polyp · control treatment	16	16	25.95	112.16
coral polyp · oil and dispersant treatment	16	16	27.48	162.37
coral polyp · oil treatment	16	16	25.65	91.98
coral polyp · dispersant treatment	16	16	14.95	67.18
Polyp	10	10	12.76	29.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.38
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.58
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.52
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.80
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.71
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.81
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.08
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	112.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.67
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.19
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.26
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	162.37
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.77
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.13
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.57
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.44
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.68
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	29.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.64
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.53
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.97
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.31

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.