Gene detail

Detailed information of OS493_036903-T1 in Lophelia pertusa

Genomic Location: scaffold_390:171933...181296
NR annotation: KAJ7318912.1, A Receptor for Ubiquitination Target [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IX29	F-box only protein 16 OS=Homo sapiens OX=9606 GN=FBXO16 PE=1 SV=1
Q9QZM9	F-box only protein 16 OS=Mus musculus OX=10090 GN=Fbxo16 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002132 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_036903-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052805 all species →	Family	GEF and Ubiquitin-Proteasome Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46857 all species →	EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_036903-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036903-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036903-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

29.2Max TPM

13.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.30	22.18
polyp at pH7 6	18	17	13.42	21.83
coral polyp · control treatment	16	16	15.50	28.57
coral polyp · oil and dispersant treatment	16	16	11.35	19.60
coral polyp · oil treatment	16	16	15.11	29.16
coral polyp · dispersant treatment	16	16	12.21	22.65
Polyp	10	10	10.99	20.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.01
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.73
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.91
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.83
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.31
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.57
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.03
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.49
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.21
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.75
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.49
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.08
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.68
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.16
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.41
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.61
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.65
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.68
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.46
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.69
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.50
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.80

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.