Gene detail

Detailed information of OS493_036909-T1 in Lophelia pertusa

Genomic Location: scaffold_391:8361...14325
NR annotation: KAJ7388542.1, Establishment of cohesion 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5FWF5	N-acetyltransferase ESCO1 OS=Homo sapiens OX=9606 GN=ESCO1 PE=1 SV=3
Q69Z69	N-acetyltransferase ESCO1 OS=Mus musculus OX=10090 GN=Esco1 PE=2 SV=2
Q5SPR8	N-acetyltransferase ESCO2 OS=Danio rerio OX=7955 GN=esco2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005718 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13880 all species →	Acetyltransf_13	ESCO1/2 acetyl-transferase	Domain	Interproscan
PF13878 all species →	zf-C2H2_3	zinc-finger of acetyl-transferase ESCO	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028009 all species →	Domain	N-acetyltransferase ESCO, acetyl-transferase domain	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR028005 all species →	Domain	N-acetyltransferase ESCO, zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45884 all species →	N-ACETYLTRANSFERASE ECO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007064 all species →	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0061733 all species →	Molecular Function	peptide-lysine-N-acetyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036909-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036909-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

56.1Max TPM

6.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.90	14.23
polyp at pH7 6	18	16	7.24	14.47
coral polyp · control treatment	16	16	9.51	54.89
coral polyp · oil and dispersant treatment	16	16	7.67	56.07
coral polyp · oil treatment	16	16	7.22	11.50
coral polyp · dispersant treatment	16	16	3.00	8.33
Polyp	10	9	4.44	7.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.23
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.19
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.46
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.10
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.01
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.50
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.75
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.93
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.62
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.16
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.17
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.31
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.64
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.78
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.