Gene detail

Detailed information of OS493_036921-T1 in Lophelia pertusa

Genomic Location: scaffold_391:135971...139353
NR annotation: KAJ7388554.1, Jouberin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N157	Jouberin OS=Homo sapiens OX=9606 GN=AHI1 PE=1 SV=1
Q8K3E5	Jouberin OS=Mus musculus OX=10090 GN=Ahi1 PE=1 SV=2
Q6DTM3	Jouberin OS=Rattus norvegicus OX=10116 GN=Ahi1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003417 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052803 all species →	Family	Primary Cilium-Associated Jouberin	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44499 all species →	JOUBERIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0044458 all species →	Biological Process	motile cilium assembly	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036921-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036921-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

38.2Max TPM

11.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	10.46	18.05
polyp at pH7 6	18	17	8.97	14.42
coral polyp · control treatment	16	16	15.74	32.98
coral polyp · oil and dispersant treatment	16	16	11.85	38.16
coral polyp · oil treatment	16	16	12.89	30.96
coral polyp · dispersant treatment	16	16	8.93	16.71
Polyp	10	10	10.58	19.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.05
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.36
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.82
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.52
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.80
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.72
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.98
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.32
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.95
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.99
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.35
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.19
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.70
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.96
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.26
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.71
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.13
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.32
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.87
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.47
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.52
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.06
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.91
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.89
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.