Gene detail

Detailed information of OS493_036929-T1 in Lophelia pertusa

Genomic Location: scaffold_391:190825...193694
NR annotation: KAJ7388562.1, hypothetical protein OS493_036929 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008378 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02698 all species →	DUF218	DUF218 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003848 all species →	Domain	Domain of unknown function DUF218	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR051599 all species →	Family	Cell Envelope Integrity and Synthesis Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30336 all species →	INNER MEMBRANE PROTEIN, PROBABLE PERMEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036929-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036929-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

49.7Max TPM

20.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	23.60	31.53
polyp at pH7 6	18	17	20.19	30.33
coral polyp · control treatment	16	16	24.25	49.65
coral polyp · oil and dispersant treatment	16	16	15.69	27.38
coral polyp · oil treatment	16	16	17.23	38.00
coral polyp · dispersant treatment	16	16	20.71	38.05
Polyp	10	10	18.55	36.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.44
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.28
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.12
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.87
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.33
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.97
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.11
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.08
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.08
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.65
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.70
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.67
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.34
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.38
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.07
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.13
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.86
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.48
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	36.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.76
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.59
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.08

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.