Gene detail

Detailed information of OS493_036936-T1 in Lophelia pertusa

Genomic Location: scaffold_391:251733...252497
NR annotation: KAJ7388569.1, Transmembrane protein 74 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009989 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14927 all species →	Neurensin	Neurensin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024883 all species →	Family	Neurensin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14796 all species →	NEURENSIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0030133 all species →	Cellular Component	transport vesicle	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0043025 all species →	Cellular Component	neuronal cell body	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036936-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036936-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

13.3Max TPM

5.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.65	12.48
polyp at pH7 6	18	18	6.40	11.89
coral polyp · control treatment	16	16	6.06	8.69
coral polyp · oil and dispersant treatment	16	15	4.23	6.63
coral polyp · oil treatment	16	16	6.86	13.27
coral polyp · dispersant treatment	16	16	4.11	7.95
Polyp	10	10	6.02	13.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.10
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.46
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.73
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.88
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.81
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.48
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.17
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.77
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.02
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.73
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.09
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.59
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.48
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.37
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.36
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.84
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.23
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.39

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.