Gene detail

Detailed information of OS493_036963-T1 in Lophelia pertusa

Genomic Location: scaffold_392:219784...221072
NR annotation: KAJ7382124.1, hypothetical protein OS493_036963 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005270 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15718 all species →	MNR	Protein moonraker	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031447 all species →	Family	Protein moonraker	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15732 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007099 all species →	Biological Process	centriole replication	Interproscan
GO:0034451 all species →	Cellular Component	centriolar satellite	Interproscan
GO:0071539 all species →	Biological Process	protein localization to centrosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036963-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036963-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

11.8Max TPM

4.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.80	10.48
polyp at pH7 6	18	16	6.13	10.46
coral polyp · control treatment	16	16	4.47	10.63
coral polyp · oil and dispersant treatment	16	16	2.96	11.82
coral polyp · oil treatment	16	16	4.38	8.17
coral polyp · dispersant treatment	16	16	1.60	3.08
Polyp	10	9	5.30	10.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.48
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.52
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.87
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.76
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.13
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.72
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.41
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.41
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.61
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.63
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.54
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.54
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.56
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.56
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.45
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.11
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.78
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.47
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.40
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.58
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.53
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.12
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.54
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.65
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.