Gene detail

Detailed information of OS493_036965-T1 in Lophelia pertusa

Genomic Location: scaffold_392:235396...241142
NR annotation: KAJ7382126.1, Coiled-coil domain-containing protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007803 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14916 all species →	CCDC92	Coiled-coil domain of unknown function	Coiled-coil	Interproscan
PF14917 all species →	CCDC74_C	Coiled coil protein 74, C terminal	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039496 all species →	Domain	CCDC92/74, N-terminal	Interproscan
IPR029422 all species →	Domain	Coiled coil protein 74, C-terminal	Interproscan
IPR040370 all species →	Family	Coiled-coil domain-containing protein 74A/74B/92	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14882 all species →	COILED-COIL DOMAIN-CONTAINING 74A	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_036965-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036965-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036965-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

112.1Max TPM

59.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	44.17	67.94
polyp at pH7 6	18	18	42.08	69.47
coral polyp · control treatment	16	16	67.87	112.10
coral polyp · oil and dispersant treatment	16	16	71.84	93.43
coral polyp · oil treatment	16	16	65.76	88.70
coral polyp · dispersant treatment	16	16	63.88	104.60
Polyp	10	10	69.76	97.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.94
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.96
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.98
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.12
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.80
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.69
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.11
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.04
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.04
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.65
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.99
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.24
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	112.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	110.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.60
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.54
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.58
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.20
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.43
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.48
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.72
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.49
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.98
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.30
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.07
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	104.60
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.23
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.82
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.40
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	97.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	94.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	91.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	78.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	75.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	69.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	56.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	46.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	45.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	40.46

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.