Gene detail

Detailed information of OS493_036966-T1 in Lophelia pertusa

Genomic Location: scaffold_392:243733...251985
NR annotation: KAJ7382127.1, Transcriptional adapter 2-alpha [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CHV6	Transcriptional adapter 2-alpha OS=Mus musculus OX=10090 GN=Tada2a PE=1 SV=1
Q6AYE3	Transcriptional adapter 2-alpha OS=Rattus norvegicus OX=10116 GN=Tada2a PE=2 SV=1
Q3SZP8	Transcriptional adapter 2-alpha OS=Bos taurus OX=9913 GN=TADA2A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006289 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04433 all species →	SWIRM	SWIRM domain	Domain	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR007526 all species →	Domain	SWIRM domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR016827 all species →	Family	Transcriptional adaptor 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12374 all species →	TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0070461 all species →	Cellular Component	SAGA-type complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11314	TADA2A, ADA2; transcriptional adapter 2-alpha	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036966-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

41.0Max TPM

10.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.92	22.45
polyp at pH7 6	18	18	15.49	26.32
coral polyp · control treatment	16	16	7.82	18.43
coral polyp · oil and dispersant treatment	16	16	5.25	22.18
coral polyp · oil treatment	16	16	8.24	12.33
coral polyp · dispersant treatment	16	16	5.88	18.33
Polyp	10	10	23.49	40.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.56
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.74
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.64
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.32
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.65
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.30
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.61
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.02
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.84
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.80
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.94
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.84
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.55
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.98
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.95
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.48
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	40.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	36.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.70
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.79

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.