Gene detail

Detailed information of OS493_037056-T1 in Lophelia pertusa

Genomic Location: scaffold_397:212770...220273
NR annotation: KAJ7388538.1, hypothetical protein OS493_037056 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03311	Cholinesterase OS=Mus musculus OX=10090 GN=Bche PE=1 SV=2
P06276	Cholinesterase OS=Homo sapiens OX=9606 GN=BCHE PE=1 SV=1
P32749	Cholinesterase OS=Bos taurus OX=9913 GN=BCHE PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000185 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00135 all species →	COesterase	Carboxylesterase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002018 all species →	Domain	Carboxylesterase, type B	Interproscan
IPR000997 all species →	Family	Cholinesterase	Interproscan
IPR019826 all species →	Active_site	Carboxylesterase type B, active site	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR051093 all species →	Family	Neuroligin and Bile salt-activated lipase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43903 all species →	NEUROLIGIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004104 all species →	Molecular Function	cholinesterase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01050	BCHE; cholinesterase	EC:3.1.1.8	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037056-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

66.3Max TPM

29.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	36.47	44.18
polyp at pH7 6	18	18	29.60	41.26
coral polyp · control treatment	16	16	37.23	66.30
coral polyp · oil and dispersant treatment	16	16	25.01	42.77
coral polyp · oil treatment	16	16	29.48	61.11
coral polyp · dispersant treatment	16	16	26.03	49.11
Polyp	10	10	21.20	32.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.18
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.18
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.15
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.08
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.90
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.37
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.95
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.03
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.72
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.33
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.81
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.33
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.31
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.72
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.30
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.45
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.84
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.26
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.98
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.63
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.66
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.81
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.94
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.93
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.32
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.64
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.26
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.16
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.11
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.87
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	32.89
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	30.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	24.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	23.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.25
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.84

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.