Gene detail

Detailed information of OS493_037082-T1 in Lophelia pertusa

Genomic Location: scaffold_399:199728...216649
NR annotation: KAJ7376076.1, V-type proton ATPase catalytic subunit A [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31400	V-type proton ATPase catalytic subunit A OS=Manduca sexta OX=7130 GN=VHAA PE=2 SV=1
Q5TTG1	V-type proton ATPase catalytic subunit A OS=Anopheles gambiae OX=7165 GN=Vha68-2 PE=3 SV=1
O16109	V-type proton ATPase catalytic subunit A OS=Aedes aegypti OX=7159 GN=VhaA PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005534 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02874 all species →	ATP-synt_ab_N	ATP synthase alpha/beta family, beta-barrel domain	Domain	Interproscan
PF16886 all species →	ATP-synt_ab_Xtn	ATPsynthase alpha/beta subunit N-term extension	Family	Interproscan
PF00006 all species →	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023366 all species →	Homologous_superfamily	ATP synthase subunit alpha, N-terminal domain-like superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004100 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Interproscan
IPR036121 all species →	Homologous_superfamily	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Interproscan
IPR022878 all species →	Family	V-type ATP synthase catalytic alpha chain	Interproscan
IPR031686 all species →	Domain	ATPsynthase alpha/beta subunit, N-terminal extension	Interproscan
IPR005725 all species →	Family	ATPase, V1 complex, subunit A	Interproscan
IPR024034 all species →	Homologous_superfamily	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Interproscan
IPR000194 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43607 all species →	V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046034 all species →	Biological Process	ATP metabolic process	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0033180 all species →	Cellular Component	proton-transporting V-type ATPase, V1 domain	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02145	ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A	EC:7.1.2.2	Rheumatoid arthritis	ko05323	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037082-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

81.7Max TPM

44.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	36.56	48.14
polyp at pH7 6	18	18	36.09	46.78
coral polyp · control treatment	16	16	57.06	79.45
coral polyp · oil and dispersant treatment	16	16	59.99	81.73
coral polyp · oil treatment	16	16	50.27	71.21
coral polyp · dispersant treatment	16	16	42.01	64.07
Polyp	10	10	24.84	39.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.88
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.51
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.49
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.91
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.78
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.20
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.02
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.82
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.76
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.99
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.69
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.73
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.94
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.70
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.21
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.53
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.44
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.04
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.04
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.76
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.34
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	39.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	35.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	31.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.43
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.70

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.