Gene detail

Detailed information of OS493_037089-T1 in Lophelia pertusa

Genomic Location: scaffold_400:53064...70892
NR annotation: KAJ7369692.1, Ras GTPase-activating-like protein iqgap1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46940	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens OX=9606 GN=IQGAP1 PE=1 SV=1
Q9JKF1	Ras GTPase-activating-like protein IQGAP1 OS=Mus musculus OX=10090 GN=Iqgap1 PE=1 SV=2
Q86VI3	Ras GTPase-activating-like protein IQGAP3 OS=Homo sapiens OX=9606 GN=IQGAP3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002348 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03836 all species →	RasGAP_C	RasGAP C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000593 all species →	Domain	RasGAP protein, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14149 all species →	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:1903479 all species →	Biological Process	mitotic actomyosin contractile ring assembly actin filament organization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037089-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037089-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

102.0Max TPM

54.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	57.70	84.25
polyp at pH7 6	18	18	57.86	76.73
coral polyp · control treatment	16	16	53.76	66.36
coral polyp · oil and dispersant treatment	16	16	53.95	102.04
coral polyp · oil treatment	16	16	57.28	80.07
coral polyp · dispersant treatment	16	16	43.59	70.81
Polyp	10	10	56.23	95.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.52
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.80
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.73
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.98
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.35
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.01
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.24
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.82
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.88
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.36
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.36
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.12
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.46
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.95
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.19
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.61
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.21
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.19
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.93
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.14
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.88
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.85
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	95.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	83.93
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	78.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	74.94
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	66.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	50.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	43.90
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	27.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	21.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.95

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.