Gene detail

Detailed information of OS493_037119-T1 in Lophelia pertusa

Genomic Location: scaffold_402:65608...66084
NR annotation: KAJ7318892.1, non-membrane spanning protein tyrosine phosphatase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKG5	Low molecular weight phosphotyrosine protein phosphatase OS=Gallus gallus OX=9031 GN=ACP1 PE=2 SV=3
P11064	Low molecular weight phosphotyrosine protein phosphatase OS=Bos taurus OX=9913 GN=ACP1 PE=1 SV=3
P81693	Low molecular weight phosphotyrosine protein phosphatase OS=Sus scrofa OX=9823 GN=ACP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009609 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01451 all species →	LMWPc	Low molecular weight phosphotyrosine protein phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023485 all species →	Domain	Phosphotyrosine protein phosphatase I	Interproscan
IPR050438 all species →	Family	Low Molecular Weight Phosphotyrosine Protein Phosphatase	Interproscan
IPR017867 all species →	Family	Protein-tyrosine phosphatase, low molecular weight	Interproscan
IPR036196 all species →	Homologous_superfamily	Phosphotyrosine protein phosphatase I superfamily	Interproscan
IPR002115 all species →	Family	Protein-tyrosine phosphatase, low molecular weight, mammalian	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11717 all species →	LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0003993 all species →	Molecular Function	acid phosphatase activity	Interproscan
GO:0004726 all species →	Molecular Function	non-membrane spanning protein tyrosine phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14394	ACP1; low molecular weight phosphotyrosine protein phosphatase	EC:3.1.3.2 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037119-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

21.1Max TPM

5.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.05	12.99
polyp at pH7 6	18	18	5.87	11.85
coral polyp · control treatment	16	16	6.73	10.79
coral polyp · oil and dispersant treatment	16	16	5.36	21.15
coral polyp · oil treatment	16	16	5.98	9.95
coral polyp · dispersant treatment	16	16	2.50	5.49
Polyp	10	10	6.05	14.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.82
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.30
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.35
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.26
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.88
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.35
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.60
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.47
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.66
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.41
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.34
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.85
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.17

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.