Gene detail

Detailed information of OS493_037152-T1 in Lophelia pertusa

Genomic Location: scaffold_405:33069...36633
NR annotation: KAJ7376047.1, ATP synthase subunit gamma, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35435	ATP synthase F(1) complex subunit gamma, mitochondrial OS=Rattus norvegicus OX=10116 GN=Atp5f1c PE=1 SV=2
Q91VR2	ATP synthase F(1) complex subunit gamma, mitochondrial OS=Mus musculus OX=10090 GN=Atp5f1c PE=1 SV=1
P05631	ATP synthase F(1) complex subunit gamma, mitochondrial OS=Bos taurus OX=9913 GN=ATP5F1C PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007546 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00231 all species →	ATP-synt	ATP synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000131 all species →	Family	ATP synthase, F1 complex, gamma subunit	Interproscan
IPR035968 all species →	Homologous_superfamily	ATP synthase, F1 complex, gamma subunit superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11693 all species →	ATP SYNTHASE GAMMA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0045261 all species →	Cellular Component	proton-transporting ATP synthase complex, catalytic core F(1)	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan
GO:0000275 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02136	ATPeF1G, ATP5C1, ATP3; F-type H+-transporting ATPase subunit gamma	-	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037152-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

810.5Max TPM

267.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	288.24	334.57
polyp at pH7 6	18	18	291.38	339.04
coral polyp · control treatment	16	16	289.47	799.04
coral polyp · oil and dispersant treatment	16	16	256.13	810.48
coral polyp · oil treatment	16	16	267.96	314.47
coral polyp · dispersant treatment	16	16	169.88	258.23
Polyp	10	10	323.35	396.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	334.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	330.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	329.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	327.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	326.83
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	322.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	295.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	283.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	283.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	277.88
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	276.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	272.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	271.61
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	267.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	265.59
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	253.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	235.60
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	231.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	339.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	337.16
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	335.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	322.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	305.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	296.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	295.87
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	294.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	287.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	281.82
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	279.67
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	274.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	273.66
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	270.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	267.64
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	263.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	260.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	259.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	799.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	306.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	288.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	286.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	274.32
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	272.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	269.71
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	268.23
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	258.98
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	253.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	248.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	240.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	236.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	233.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	202.73
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	192.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	810.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	283.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	267.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	258.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	254.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	249.01
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	239.43
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	235.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	201.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	199.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	198.48
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	193.50
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	192.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	191.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	170.34
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	153.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	314.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	312.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	307.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	297.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	286.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	282.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	279.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	270.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	269.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	265.79
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	260.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	251.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	250.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	217.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	213.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	207.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	258.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	243.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	242.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	227.89
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	204.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	179.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	163.18
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	161.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	157.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	152.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	141.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	135.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	133.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	130.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	396.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	393.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	387.87
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	355.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	328.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	313.95
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	292.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	285.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	264.34
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	216.30

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.