Gene detail

Detailed information of OS493_037154-T1 in Lophelia pertusa

Genomic Location: scaffold_405:37744...40245
NR annotation: KAJ7376048.1, ATP synthase subunit gamma, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O01666	ATP synthase subunit gamma, mitochondrial OS=Drosophila melanogaster OX=7227 GN=ATPsyngamma PE=2 SV=2
P05631	ATP synthase F(1) complex subunit gamma, mitochondrial OS=Bos taurus OX=9913 GN=ATP5F1C PE=1 SV=3
P35435	ATP synthase F(1) complex subunit gamma, mitochondrial OS=Rattus norvegicus OX=10116 GN=Atp5f1c PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007546 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00231 all species →	ATP-synt	ATP synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000131 all species →	Family	ATP synthase, F1 complex, gamma subunit	Interproscan
IPR023632 all species →	Conserved_site	ATP synthase, F1 complex, gamma subunit conserved site	Interproscan
IPR035968 all species →	Homologous_superfamily	ATP synthase, F1 complex, gamma subunit superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11693 all species →	ATP SYNTHASE GAMMA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000275 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)	Interproscan
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0045261 all species →	Cellular Component	proton-transporting ATP synthase complex, catalytic core F(1)	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037154-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037154-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

923.2Max TPM

346.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	440.21	693.32
polyp at pH7 6	18	18	479.10	652.51
coral polyp · control treatment	16	16	282.61	710.68
coral polyp · oil and dispersant treatment	16	16	239.30	784.14
coral polyp · oil treatment	16	16	279.36	453.90
coral polyp · dispersant treatment	16	16	171.03	416.55
Polyp	10	10	597.21	923.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	693.32
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	678.80
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	533.05
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	500.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	463.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	441.89
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	438.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	428.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	422.13
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	417.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	400.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	392.95
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	382.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	373.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	357.34
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	341.66
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	334.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	322.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	652.51
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	630.98
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	585.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	578.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	565.49
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	546.47
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	504.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	478.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	459.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	455.09
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	448.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	430.72
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	392.27
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	385.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	384.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	381.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	376.18
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	367.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	710.68
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	392.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	377.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	334.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	295.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	282.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	270.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	252.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	236.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	228.29
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	221.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	216.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	213.10
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	179.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	159.57
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	150.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	784.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	288.01
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	257.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	243.20
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	241.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	239.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	238.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	203.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	186.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	182.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	182.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	169.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	165.52
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	163.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	159.24
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	124.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	453.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	398.26
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	323.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	312.75
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	307.59
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	285.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	265.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	261.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	251.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	248.15
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	237.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	237.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	226.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	226.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	225.47
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	206.86
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	416.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	331.05
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	225.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	218.17
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	208.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	187.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	170.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	138.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	133.97
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	133.54
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.73
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	923.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	834.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	699.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	563.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	557.56
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	522.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	482.12
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	475.49
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	470.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	443.08

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.