Gene detail

Detailed information of OS493_037164-T1 in Lophelia pertusa

Genomic Location: scaffold_405:109991...119241
NR annotation: KAJ7376057.1, hypothetical protein OS493_037164 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58CV5	Glucose-6-phosphate exchanger SLC37A2 OS=Bos taurus OX=9913 GN=SLC37A2 PE=2 SV=1
Q9WU81	Glucose-6-phosphate exchanger SLC37A2 OS=Mus musculus OX=10090 GN=Slc37a2 PE=1 SV=1
Q7SY29	Glucose-6-phosphate exchanger SLC37A2 OS=Danio rerio OX=7955 GN=slc37a2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003954 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43184 all species →	MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13783	SLC37A1_2; MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037164-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

22.3Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.59	14.49
polyp at pH7 6	18	18	10.11	14.51
coral polyp · control treatment	16	16	14.34	19.91
coral polyp · oil and dispersant treatment	16	16	11.45	22.28
coral polyp · oil treatment	16	16	12.26	21.02
coral polyp · dispersant treatment	16	16	7.79	14.43
Polyp	10	10	6.17	12.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.96
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.90
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.21
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.09
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.29
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.11
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.65
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.60
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.47
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.72
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.83
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.23
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.09
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.19
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.83
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.81
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.48
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.60
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.10

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.