Gene detail

Detailed information of OS493_037167-T1 in Lophelia pertusa

Genomic Location: scaffold_405:144456...161783
NR annotation: KAJ7376060.1, hypothetical protein OS493_037167 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UPE1	SRSF protein kinase 3 OS=Homo sapiens OX=9606 GN=SRPK3 PE=1 SV=2
B8Y466	SRSF protein kinase 3 OS=Sus scrofa OX=9823 GN=SRPK3 PE=2 SV=1
Q9Z0G2	SRSF protein kinase 3 OS=Mus musculus OX=10090 GN=Srpk3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003754 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051334 all species →	Family	Serine/Arginine-Rich Protein Kinases	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47634 all species →	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000245 all species →	Biological Process	spliceosomal complex assembly	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0050684 all species →	Biological Process	regulation of mRNA processing	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15409	SRPK1; serine/threonine-protein kinase SRPK1	EC:2.7.11.1	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037167-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

66.6Max TPM

14.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.23	20.23
polyp at pH7 6	18	18	13.93	22.80
coral polyp · control treatment	16	16	20.95	65.81
coral polyp · oil and dispersant treatment	16	16	17.67	66.58
coral polyp · oil treatment	16	16	17.81	27.68
coral polyp · dispersant treatment	16	16	11.69	22.94
Polyp	10	9	5.84	13.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.23
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.56
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.90
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.61
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.76
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.13
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.81
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.56
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.51
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.02
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.15
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.14
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.28
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.85
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.33
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.04
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.70
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.12
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.44
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.19
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.08
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.87
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.12
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.59
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.96
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.97
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.