Gene detail

Detailed information of OS493_037175-T1 in Lophelia pertusa

Genomic Location: scaffold_405:208352...213069
NR annotation: KAJ7376067.1, SRSF protein kinase 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z0G2	SRSF protein kinase 3 OS=Mus musculus OX=10090 GN=Srpk3 PE=1 SV=1
Q9UPE1	SRSF protein kinase 3 OS=Homo sapiens OX=9606 GN=SRPK3 PE=1 SV=2
B8Y466	SRSF protein kinase 3 OS=Sus scrofa OX=9823 GN=SRPK3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003754 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR051334 all species →	Family	Serine/Arginine-Rich Protein Kinases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47634 all species →	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000245 all species →	Biological Process	spliceosomal complex assembly	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0050684 all species →	Biological Process	regulation of mRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037175-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037175-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

17.5Max TPM

3.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.74	14.14
polyp at pH7 6	18	16	6.64	17.55
coral polyp · control treatment	16	16	2.91	8.25
coral polyp · oil and dispersant treatment	16	14	2.28	10.47
coral polyp · oil treatment	16	16	2.92	5.90
coral polyp · dispersant treatment	16	14	1.57	4.24
Polyp	10	9	2.78	6.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.86
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.18
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.42
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.55
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.61
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.25
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.50
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.16
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.93
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.54
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.26
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.38
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.