Gene detail

Detailed information of OS493_037184-T1 in Lophelia pertusa

Genomic Location: scaffold_406:155690...159941
NR annotation: KAJ7369683.1, Eukaryotic translation initiation factor 3 subunit K [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SGZ5	Eukaryotic translation initiation factor 3 subunit K OS=Nematostella vectensis OX=45351 GN=v1g170558 PE=3 SV=1
B4P8V1	Eukaryotic translation initiation factor 3 subunit K OS=Drosophila yakuba OX=7245 GN=GE12213 PE=2 SV=1
B3MIY7	Eukaryotic translation initiation factor 3 subunit K OS=Drosophila ananassae OX=7217 GN=GF13261 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007248 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10075 all species →	CSN8_PSD8_EIF3K	CSN8/PSMD8/EIF3K family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR033464 all species →	Domain	CSN8/PSMD8/EIF3K	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR009374 all species →	Family	Eukaryotic translation initiation factor 3 subunit K	Interproscan
IPR016020 all species →	Homologous_superfamily	Translation initiation factor 3, subunit 12, N-terminal, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13022 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006446 all species →	Biological Process	regulation of translational initiation	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037184-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037184-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

155.2Max TPM

40.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	43.57	93.97
polyp at pH7 6	18	18	57.49	99.82
coral polyp · control treatment	16	16	37.26	56.82
coral polyp · oil and dispersant treatment	16	16	30.68	48.91
coral polyp · oil treatment	16	16	32.36	51.08
coral polyp · dispersant treatment	16	16	20.85	41.57
Polyp	10	10	71.30	155.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	93.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.31
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.66
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.65
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.46
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.67
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.22
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.82
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.43
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.08
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.89
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.62
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.50
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.80
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.82
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.27
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.91
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.55
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.97
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.77
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.41
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.91
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.25
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.55
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.48
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	155.16
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	89.83
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	87.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	75.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	65.66
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	65.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	50.91
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	49.76
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	40.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	32.46

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.