Gene detail

Detailed information of OS493_037186-T1 in Lophelia pertusa

Genomic Location: scaffold_406:169122...169442
NR annotation: KAJ7369684.1, Dynein light chain roadblock-type 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32P85	Dynein light chain roadblock-type 2 OS=Bos taurus OX=9913 GN=DYNLRB2 PE=3 SV=1
Q9DAJ5	Dynein light chain roadblock-type 2 OS=Mus musculus OX=10090 GN=Dynlrb2 PE=1 SV=1
Q8TF09	Dynein light chain roadblock-type 2 OS=Homo sapiens OX=9606 GN=DYNLRB2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001152 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03259 all species →	Robl_LC7	Roadblock/LC7 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004942 all species →	Domain	Roadblock/LAMTOR2 domain	Interproscan
IPR016561 all species →	Family	Dynein light chain roadblock-type 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10779 all species →	DYNEIN LIGHT CHAIN ROADBLOCK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10419	DYNLRB, DNCL2; dynein light chain roadblock-type	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037186-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

5.2Max TPM

1.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	1.46	4.28
polyp at pH7 6	18	13	1.20	4.24
coral polyp · control treatment	16	16	1.57	3.54
coral polyp · oil and dispersant treatment	16	15	1.23	3.33
coral polyp · oil treatment	16	16	1.84	4.55
coral polyp · dispersant treatment	16	15	0.93	2.79
Polyp	10	8	1.59	5.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.42
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.13
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.72
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.62
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.37
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.01
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.05
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.54
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.28
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.90
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.55
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.54
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.98
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.79
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.09
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.71
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.59
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.