Gene detail

Detailed information of OS493_037195-T1 in Lophelia pertusa

Genomic Location: scaffold_407:13098...19488
NR annotation: KAJ7351015.1, hypothetical protein OS493_037195 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W0T1	Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster OX=7227 GN=E(bx) PE=1 SV=2
Q92831	Histone acetyltransferase KAT2B OS=Homo sapiens OX=9606 GN=KAT2B PE=1 SV=3
O60885	Bromodomain-containing protein 4 OS=Homo sapiens OX=9606 GN=BRD4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005788 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR050935 all species →	Family	Bromodomain-containing chromatin reader	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22880 all species →	FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0070577 all species →	Molecular Function	lysine-acetylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037195-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037195-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

28.5Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.06	7.82
polyp at pH7 6	18	17	6.23	8.96
coral polyp · control treatment	16	16	8.28	19.01
coral polyp · oil and dispersant treatment	16	16	6.71	28.46
coral polyp · oil treatment	16	16	7.05	12.09
coral polyp · dispersant treatment	16	16	4.12	10.81
Polyp	10	8	4.10	12.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.82
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.12
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.59
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.56
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.12
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.70
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.51
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.06
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.32
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.80
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.35
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.82
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.23
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.