Gene detail

Detailed information of OS493_037256-T1 in Lophelia pertusa

Genomic Location: scaffold_412:104394...107560
NR annotation: KAJ7369669.1, Steroid 5 alpha-reductase 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8X8R3	Polyprenal reductase OS=Caenorhabditis briggsae OX=6238 GN=CBG09584 PE=3 SV=1
Q9H8P0	Polyprenal reductase OS=Homo sapiens OX=9606 GN=SRD5A3 PE=1 SV=1
Q17428	Polyprenal reductase OS=Caenorhabditis elegans OX=6239 GN=srdf-3 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010283 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_037256-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039698 all species →	Family	Polyprenol reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14624 all species →	DFG10 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003865 all species →	Molecular Function	3-oxo-5-alpha-steroid 4-dehydrogenase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006488 all species →	Biological Process	dolichol-linked oligosaccharide biosynthetic process	Interproscan
GO:0016095 all species →	Biological Process	polyprenol catabolic process	Interproscan
GO:0019408 all species →	Biological Process	dolichol biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037256-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037256-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

6.8Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.32	3.09
polyp at pH7 6	18	16	2.86	6.18
coral polyp · control treatment	16	16	3.50	6.79
coral polyp · oil and dispersant treatment	16	16	2.56	3.98
coral polyp · oil treatment	16	15	3.20	5.25
coral polyp · dispersant treatment	16	15	1.54	3.04
Polyp	10	9	2.26	3.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.42
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.82
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.10
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.43
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.32
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.64
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.37
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.47
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.95
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.37
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.69
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.49
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.73
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.