Gene detail

Detailed information of OS493_037284-T1 in Lophelia pertusa

Genomic Location: scaffold_414:105870...106883
NR annotation: KAJ7318873.1, hypothetical protein OS493_037284 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000634 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13151 all species →	DUF3990	Protein of unknown function (DUF3990)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025051 all species →	Family	Protein of unknown function DUF3990	Interproscan

PANTHER

No PANTHER signature was detected for OS493_037284-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_037284-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10454	KLHL17; kelch-like protein 17 (actinfilin)	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037284-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

95TPM > 0

7Conditions

28.4Max TPM

2.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.90	5.93
polyp at pH7 6	18	17	2.18	4.66
coral polyp · control treatment	16	12	2.20	7.30
coral polyp · oil and dispersant treatment	16	14	1.97	6.21
coral polyp · oil treatment	16	12	2.55	11.48
coral polyp · dispersant treatment	16	13	0.58	2.60
Polyp	10	9	6.05	28.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.51
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.10
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.76
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.80
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.33
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.41
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.14
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.11
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.03
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.68
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.19
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.84
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.04
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.63
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.01
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.04
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.01
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	28.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.47
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.