Gene detail

Detailed information of OS493_037286-T1 in Lophelia pertusa

Genomic Location: scaffold_414:121466...122862
NR annotation: KAJ7318875.1, hypothetical protein OS493_037286 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000634 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13151 all species →	DUF3990	Protein of unknown function (DUF3990)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025051 all species →	Family	Protein of unknown function DUF3990	Interproscan

PANTHER

No PANTHER signature was detected for OS493_037286-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_037286-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037286-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037286-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

84.0Max TPM

16.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.88	23.73
polyp at pH7 6	18	18	8.28	24.73
coral polyp · control treatment	16	16	17.74	28.65
coral polyp · oil and dispersant treatment	16	16	16.47	31.52
coral polyp · oil treatment	16	16	17.70	28.11
coral polyp · dispersant treatment	16	16	28.40	84.00
Polyp	10	10	17.67	38.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.73
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.61
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.64
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.19
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.35
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.75
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.45
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.07
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.82
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.20
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.74
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.51
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.17
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.23
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.90
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	38.62
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	24.98
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.37
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.31

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.