Gene detail

Detailed information of OS493_037289-T1 in Lophelia pertusa

Genomic Location: scaffold_414:140409...146376
NR annotation: KAJ7318878.1, hypothetical protein OS493_037289 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007274 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12824 all species →	MRP-L20	Mitochondrial ribosomal protein subunit L20	Domain	Interproscan

InterPro

No InterPro signature was recorded for OS493_037289-T1 in Lophelia pertusa.

PANTHER

No PANTHER signature was recorded for OS493_037289-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_037289-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037289-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037289-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

46.4Max TPM

13.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.55	19.05
polyp at pH7 6	18	18	14.91	22.56
coral polyp · control treatment	16	16	15.55	32.28
coral polyp · oil and dispersant treatment	16	16	11.41	46.39
coral polyp · oil treatment	16	16	15.17	26.89
coral polyp · dispersant treatment	16	16	7.68	14.65
Polyp	10	10	18.62	23.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.05
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.67
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.42
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.03
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.82
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.35
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.36
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.58
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.60
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.40
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.91
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.93
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.62
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.41
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.53
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.37
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.77
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.30
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	21.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.46
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.76

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.