Gene detail

Detailed information of OS493_037290-T1 in Lophelia pertusa

Genomic Location: scaffold_414:168155...179228
NR annotation: KAJ7318879.1, S-adenosylhomocysteine hydrolase-like protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5DFN2	S-adenosylhomocysteine hydrolase-like protein 1 OS=Rattus norvegicus OX=10116 GN=Ahcyl1 PE=1 SV=2
Q5R889	Putative adenosylhomocysteinase 3 OS=Pongo abelii OX=9601 GN=AHCYL2 PE=2 SV=1
O43865	S-adenosylhomocysteine hydrolase-like protein 1 OS=Homo sapiens OX=9606 GN=AHCYL1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001227 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05221 all species →	AdoHcyase	S-adenosyl-L-homocysteine hydrolase	Domain	Interproscan
PF00670 all species →	AdoHcyase_NAD	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020082 all species →	Conserved_site	S-adenosyl-L-homocysteine hydrolase, conserved site	Interproscan
IPR042172 all species →	Homologous_superfamily	Adenosylhomocysteinase-like superfamily	Interproscan
IPR000043 all species →	Family	Adenosylhomocysteinase-like	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR015878 all species →	Domain	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23420 all species →	ADENOSYLHOMOCYSTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0033353 all species →	Biological Process	S-adenosylmethionine cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01251	AHCY, ahcY; adenosylhomocysteinase	EC:3.13.2.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037290-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

531.8Max TPM

126.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	52.40	85.14
polyp at pH7 6	18	18	59.83	89.77
coral polyp · control treatment	16	16	133.20	426.13
coral polyp · oil and dispersant treatment	16	16	254.82	531.78
coral polyp · oil treatment	16	16	98.67	157.19
coral polyp · dispersant treatment	16	16	227.58	512.64
Polyp	10	10	49.04	84.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	85.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.83
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.03
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.85
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.56
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.71
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.71
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.24
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.88
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.29
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.01
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.19
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	426.13
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	181.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	164.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	142.72
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	139.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.83
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.30
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.46
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.71
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.22
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.26
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.05
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	531.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	445.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	358.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	336.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	320.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	275.88
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	273.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	260.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	238.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	195.97
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	163.42
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	159.92
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	152.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	144.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.85
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	157.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	150.42
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	134.90
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	134.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	127.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	118.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.11
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.28
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	512.64
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	423.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	403.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	375.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	249.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	248.40
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	211.74
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	210.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	178.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	159.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	159.27
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	147.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	138.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.44
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	84.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	62.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	53.09
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	48.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	46.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	45.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	43.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	38.96
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	32.32

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.