Gene detail

Detailed information of OS493_037297-T1 in Lophelia pertusa

Genomic Location: scaffold_415:44639...54657
NR annotation: KAJ7388486.1, suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZLF0	Hsc70-interacting protein OS=Gallus gallus OX=9031 GN=ST13 PE=2 SV=1
Q5RF31	Hsc70-interacting protein OS=Pongo abelii OX=9601 GN=ST13 PE=2 SV=1
P50502	Hsc70-interacting protein OS=Homo sapiens OX=9606 GN=ST13 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005981 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18253 all species →	HipN	Hsp70-interacting protein N N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR034649 all species →	Domain	Hsp70-interacting protein, N-terminal	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45883 all species →	HSC70-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0030544 all species →	Molecular Function	Hsp70 protein binding	Interproscan
GO:0051085 all species →	Biological Process	chaperone cofactor-dependent protein refolding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09560	ST13; suppressor of tumorigenicity protein 13	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037297-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

178.9Max TPM

80.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	75.04	98.75
polyp at pH7 6	18	18	68.67	88.98
coral polyp · control treatment	16	16	106.86	178.95
coral polyp · oil and dispersant treatment	16	16	80.78	122.45
coral polyp · oil treatment	16	16	92.00	142.23
coral polyp · dispersant treatment	16	16	82.50	140.49
Polyp	10	10	48.77	65.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	98.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.92
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.62
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.61
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.42
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.77
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.49
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.90
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.41
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.75
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.27
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	178.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	163.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	163.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	128.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.08
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.07
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.75
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.23
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.68
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.97
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.97
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	142.23
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	127.95
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	126.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	120.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	118.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.64
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.53
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	140.49
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.52
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.68
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.25
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.83
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	65.98
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	63.93
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	60.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	56.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	47.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	47.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	44.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	40.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	40.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.71

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.