Gene detail

Detailed information of OS493_037354-T1 in Lophelia pertusa

Genomic Location: scaffold_419:73173...83759
NR annotation: KAJ7350997.1, hypothetical protein OS493_037354 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UI32	Glutaminase liver isoform, mitochondrial OS=Homo sapiens OX=9606 GN=GLS2 PE=1 SV=2
Q571F8	Glutaminase liver isoform, mitochondrial OS=Mus musculus OX=10090 GN=Gls2 PE=1 SV=2
P28492	Glutaminase liver isoform, mitochondrial OS=Rattus norvegicus OX=10116 GN=Gls2 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009961 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17959 all species →	EF-hand_14	EF-hand domain	Domain	Interproscan
PF04960 all species →	Glutaminase	Glutaminase	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012338 all species →	Homologous_superfamily	Beta-lactamase/transpeptidase-like	Interproscan
IPR015868 all species →	Family	Glutaminase	Interproscan
IPR041541 all species →	Domain	Glutaminase, EF-hand domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12544 all species →	GLUTAMINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004359 all species →	Molecular Function	glutaminase activity	Interproscan
GO:0006537 all species →	Biological Process	glutamate biosynthetic process	Interproscan
GO:0006541 all species →	Biological Process	glutamine metabolic process	Interproscan
GO:0006543 all species →	Biological Process	glutamine catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01425	glsA, GLS; glutaminase	EC:3.5.1.2	Central carbon metabolism in cancer	ko05230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037354-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

12.6Max TPM

5.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.33	9.03
polyp at pH7 6	18	17	5.88	8.21
coral polyp · control treatment	16	16	7.26	12.60
coral polyp · oil and dispersant treatment	16	16	4.64	7.16
coral polyp · oil treatment	16	16	6.59	10.62
coral polyp · dispersant treatment	16	16	4.14	8.85
Polyp	10	9	3.71	7.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.06
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.49
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.80
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.60
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.09
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.07
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.67
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.99
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.97
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.42
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.45
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.39
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.03
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.71
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.99
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.51
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.