Gene detail

Detailed information of OS493_037356-T1 in Lophelia pertusa

Genomic Location: scaffold_419:99550...99975
NR annotation: KAJ7350999.1, hypothetical protein OS493_037356 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002482 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_037356-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR007734 all species →	Family	Heparan sulphate 2-O-sulfotransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12129 all species →	HEPARAN SULFATE 2-O-SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004394 all species →	Molecular Function	heparan sulfate 2-O-sulfotransferase activity	Interproscan
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0015014 all species →	Biological Process	heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Interproscan
GO:0015015 all species →	Biological Process	heparan sulfate proteoglycan biosynthetic process, enzymatic modification	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037356-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037356-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

17.1Max TPM

4.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.39	17.15
polyp at pH7 6	18	18	6.16	14.04
coral polyp · control treatment	16	16	3.07	6.60
coral polyp · oil and dispersant treatment	16	14	1.92	6.53
coral polyp · oil treatment	16	16	4.32	12.19
coral polyp · dispersant treatment	16	16	2.20	8.55
Polyp	10	10	4.63	7.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.15
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.54
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.42
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.02
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.63
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.22
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.72
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.63
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.98
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.36
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.53
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.32
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.01
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.68
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.85
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.09
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.49
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.77

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.