Gene detail

Detailed information of OS493_037361-T1 in Lophelia pertusa

Genomic Location: scaffold_419:180155...180947
NR annotation: KAJ7351004.1, hypothetical protein OS493_037361 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BVA5	Lipid droplet-associated hydrolase OS=Mus musculus OX=10090 GN=Ldah PE=1 SV=1
Q5HZX7	Lipid droplet-associated hydrolase OS=Rattus norvegicus OX=10116 GN=Ldah PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002322 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10230 all species →	LIDHydrolase	Lipid-droplet associated hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019363 all species →	Family	Lipid droplet-associated hydrolase	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13390 all species →	LIPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005811 all species →	Cellular Component	lipid droplet	Interproscan
GO:0016298 all species →	Molecular Function	lipase activity	Interproscan
GO:0019915 all species →	Biological Process	lipid storage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037361-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037361-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

20.9Max TPM

5.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.93	18.91
polyp at pH7 6	18	17	8.39	20.93
coral polyp · control treatment	16	16	6.14	11.07
coral polyp · oil and dispersant treatment	16	16	5.07	8.21
coral polyp · oil treatment	16	16	6.40	12.22
coral polyp · dispersant treatment	16	15	3.45	9.37
Polyp	10	8	3.79	12.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.46
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.99
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.10
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.37
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.93
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.24
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.78
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.20
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.47
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.97
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.39
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.95
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.80
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.98
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.97
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.35
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.48
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.83
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.