Gene detail

Detailed information of OS493_037363-T1 in Lophelia pertusa

Genomic Location: scaffold_419:184702...199318
NR annotation: KAJ7351006.1, Ubiquinol-cytochrome-c reductase complex assembly factor 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W6I0	Ubiquinol-cytochrome-c reductase complex assembly factor 1 OS=Xenopus laevis OX=8355 GN=uqcc1 PE=2 SV=1
Q9CWU6	Ubiquinol-cytochrome c reductase complex assembly factor 1 OS=Mus musculus OX=10090 GN=Uqcc1 PE=1 SV=1
Q9NVA1	Ubiquinol-cytochrome c reductase complex assembly factor 1 OS=Homo sapiens OX=9606 GN=UQCC1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007756 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03981 all species →	Ubiq_cyt_C_chap	Ubiquinol-cytochrome C chaperone	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007129 all species →	Family	Ubiquinol-cytochrome c chaperone, CBP3	Interproscan
IPR021150 all species →	Domain	Ubiquinol-cytochrome c chaperone	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12184 all species →	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX ASSEMBLY FACTOR 1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0034551 all species →	Biological Process	mitochondrial respiratory chain complex III assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17662	CBP3, UQCC; cytochrome b pre-mRNA-processing protein 3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037363-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

72.2Max TPM

25.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.65	34.89
polyp at pH7 6	18	18	23.47	41.90
coral polyp · control treatment	16	16	30.08	53.03
coral polyp · oil and dispersant treatment	16	16	31.60	54.50
coral polyp · oil treatment	16	16	27.09	39.95
coral polyp · dispersant treatment	16	16	19.45	40.62
Polyp	10	10	24.33	72.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.89
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.24
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.10
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.60
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.43
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.95
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.53
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.68
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.74
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.60
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.01
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.33
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.62
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.15
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.78
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.96
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.50
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.69
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.88
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.93
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.81
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.81
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.42
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.83
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.78
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.45
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.36
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.60
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.73
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	72.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	32.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	22.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.06
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.29

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.