Gene detail

Detailed information of OS493_037398-T1 in Lophelia pertusa

Genomic Location: scaffold_422:58565...66285
NR annotation: KAJ7382062.1, Cytosolic phospholipase A2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R8A5	Cytosolic phospholipase A2 OS=Pongo abelii OX=9601 GN=PLA2G4A PE=2 SV=1
Q7T0T9	Cytosolic phospholipase A2 OS=Xenopus laevis OX=8355 GN=pla2g4a PE=2 SV=1
P47712	Cytosolic phospholipase A2 OS=Homo sapiens OX=9606 GN=PLA2G4A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001136 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01735 all species →	PLA2_B	Lysophospholipase catalytic domain	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR002642 all species →	Domain	Lysophospholipase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10728 all species →	CYTOSOLIC PHOSPHOLIPASE A2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0009395 all species →	Biological Process	phospholipid catabolic process	Interproscan
GO:0004623 all species →	Molecular Function	phospholipase A2 activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0046475 all species →	Biological Process	glycerophospholipid catabolic process	Interproscan
GO:0047498 all species →	Molecular Function	calcium-dependent phospholipase A2 activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037398-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037398-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

117.3Max TPM

23.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.92	45.09
polyp at pH7 6	18	18	19.86	39.12
coral polyp · control treatment	16	16	23.93	76.00
coral polyp · oil and dispersant treatment	16	15	19.05	57.69
coral polyp · oil treatment	16	16	21.59	66.75
coral polyp · dispersant treatment	16	16	37.11	117.26
Polyp	10	10	17.38	43.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.01
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.85
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.34
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.75
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.57
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.86
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.13
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.55
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.95
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.59
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.78
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.69
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.38
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.25
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.16
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.92
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.69
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.36
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.24
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.93
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.70
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.99
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.51
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.11
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.93
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.60
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.01
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.33
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	43.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	26.07
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.95
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.30
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.04

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.